deeprm qc

Quality-control utilities for predictions and site-level outputs.

Group help

DeepRM QC Module

usage: deeprm qc [-h] {run,alignment,block} ...

Positional Arguments

{run,alignment,block}

Possible choices: run, alignment, block

Sub-commands

run

Basic QC summaries

deeprm qc run

alignment

Inspect alignments and metrics

deeprm qc alignment

block

Inspect block-level signals

deeprm qc block

Examples

# Inspect run
deeprm qc run -i <prediction_dir> -o <output_dir>

# Inspect training data
deeprm qc block -i <block_file> -o <output_dir> -t m6A

# Inspect alignment
deeprm qc alignment -i <bam_file> -o <output_dir>